Description
MSA on reference database and infer reference tree
Epilog
Semidán Robaina Estévez (srobaina@ull.edu.es), 2021
Usage:
usage: metatag tree [-h] [args]
Arguments
short | long | default | help |
---|---|---|---|
-h |
--help |
show this help message and exit | |
--in |
None |
path to reference database | |
--outdir |
None |
path to output directory | |
--msa_method |
muscle |
choose method for msa | |
--tree_method |
iqtree |
choose method for tree inference | |
--tree_model |
modeltest |
choose substitution model for iqtree inference. Choices=["iqtest", "modeltest", "a valid model name"]. Defaults to optimal per modeltest-ng. |