Description

MSA on reference database and infer reference tree

Epilog

Semidán Robaina Estévez (srobaina@ull.edu.es), 2021

Usage:

usage: metatag tree [-h] [args] 

Arguments

short long default help
-h --help show this help message and exit
--in None path to reference database
--outdir None path to output directory
--msa_method muscle choose method for msa
--tree_method iqtree choose method for tree inference
--tree_model modeltest choose substitution model for iqtree inference. Choices=["iqtest", "modeltest", "a valid model name"]. Defaults to optimal per modeltest-ng.