Description
Translate synteny structure with gene symbols into one with HMM groups, according to provided HMM database.
Usage:
usage: pynteny parse [-h] [args]
Arguments
| short | long | default | help |
|---|---|---|---|
-h |
--help |
show this help message and exit | |
-s |
--synteny_struc |
None |
synteny structure containing gene symbols instead of HMMs |
-m |
--hmm_meta |
None |
path to hmm database metadata file. If already downloaded with pynteny download, hmm meta file is retrieved from the default location. |
-l |
--log |
None |
path to log file. Log not written by default. |